diff --git a/src/citra_qt/configuration/configure_hotkeys.cpp b/src/citra_qt/configuration/configure_hotkeys.cpp
index 551d36758..60c481aaf 100644
--- a/src/citra_qt/configuration/configure_hotkeys.cpp
+++ b/src/citra_qt/configuration/configure_hotkeys.cpp
@@ -118,7 +118,6 @@ void ConfigureHotkeys::applyConfiguration(HotkeyRegistry& registry) {
     }
 
     registry.SaveHotkeys();
-    Settings::Apply();
 }
 
 void ConfigureHotkeys::retranslateUi() {